Lopatkin, Allison: search on Z-Library

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1

A unifying framework for interpreting and predicting mutualistic systems

Wu, Feilun, Lopatkin, Allison J., Needs, Daniel A., Lee, Charlotte T., Mukherjee, Sayan, You, Lingchong

Journal:

Nature Communications

Year:

2019

Language:

english

File:

PDF, 887 KB

english, 2019

2

Synthetic Biology Looks Good on Paper

Lopatkin, Allison J., You, Lingchong

Journal:

Year:

2014

Language:

english

File:

PDF, 265 KB

english, 2014

3

Bacterial Metabolism and Antibiotic Efficacy

Stokes, Jonathan M., Lopatkin, Allison J., Lobritz, Michael A., Collins, James J.

Journal:

Cell Metabolism

Year:

2019

Language:

english

File:

PDF, 1.21 MB

english, 2019

4

Collective antibiotic tolerance: mechanisms, dynamics and intervention

Meredith, Hannah R, Srimani, Jaydeep K, Lee, Anna J, Lopatkin, Allison J, You, Lingchong

Journal:

Nature Chemical Biology

Year:

2015

Language:

english

File:

PDF, 1.47 MB

english, 2015

5

Dynamic control and quantification of bacterial population dynamics in droplets

Huang, Shuqiang, Srimani, Jaydeep K., Lee, Anna J., Zhang, Ying, Lopatkin, Allison J., Leong, Kam W., You, Lingchong

Journal:

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

6

Bacterial Temporal Dynamics Enable Optimal Design of Antibiotic Treatment

Meredith, Hannah R., Lopatkin, Allison J., Anderson, Deverick J., You, Lingchong, Igoshin, Oleg A

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 707 KB

english, 2015

7

A Power-Law Dependence of Bacterial Invasion on Mammalian Host Receptors

Lee, Tae J., Wong, Jeffrey, Bae, Sena, Lee, Anna Jisu, Lopatkin, Allison, Yuan, Fan, You, Lingchong, Römer, Winfried

Journal:

PLoS Computational Biology

Year:

2015

Language:

english

File:

PDF, 1.16 MB

english, 2015

8

Dissecting the effects of antibiotics on horizontal gene transfer: Analysis suggests a critical role of selection dynamics

Lopatkin, Allison J., Sysoeva, Tatyana A., You, Lingchong

Journal:

Year:

2016

Language:

english

File:

PDF, 648 KB

english, 2016

9

Antibiotics as a selective driver for conjugation dynamics

Lopatkin, Allison J., Huang, Shuqiang, Smith, Robert P., Srimani, Jaydeep K., Sysoeva, Tatyana A., Bewick, Sharon, Karig, David K., You, Lingchong

Journal:

Nature Microbiology

Year:

2016

Language:

english

File:

PDF, 950 KB

english, 2016

10

Elements of biological oscillations in time and space

Cao, Yangxiaolu, Lopatkin, Allison, You, Lingchong

Journal:

Nature Structural and Molecular Biology

Year:

2016

Language:

english

File:

PDF, 440 KB

english, 2016

11

Cooperation and competition shape ecological resistance during periodic spatial disturbance of engineered bacteria

Wilson, Cortney E., Lopatkin, Allison J., Craddock, Travis J. A., Driscoll, William W., Eldakar, Omar Tonsi, Lopez, Jose V., Smith, Robert P.

Journal:

Scientific Reports

Year:

2017

Language:

english

File:

PDF, 3.60 MB

english, 2017

12

Drug detoxification dynamics explain the postantibiotic effect

Srimani, Jaydeep K, Huang, Shuqiang, Lopatkin, Allison J, You, Lingchong

Journal:

Molecular Systems Biology

Year:

2017

Language:

english

File:

PDF, 568 KB

english, 2017

13

Persistence and reversal of plasmid-mediated antibiotic resistance

Lopatkin, Allison J., Meredith, Hannah R., Srimani, Jaydeep K., Pfeiffer, Connor, Durrett, Rick, You, Lingchong

Journal:

Nature Communications

Year:

2017

Language:

english

File:

PDF, 1.04 MB

english, 2017

14

Applying ecological resistance and resilience to dissect bacterial antibiotic responses

Meredith, Hannah R., Andreani, Virgile, Ma, Helena R., Lopatkin, Allison J., Lee, Anna J., Anderson, Deverick J., Batt, Gregory, You, Lingchong

Journal:

Science Advances

Year:

2018

Language:

english

File:

PDF, 781 KB

english, 2018

15

A multiplexable assay for screening antibiotic lethality against drug-tolerant bacteria

Stokes, Jonathan M., Gutierrez, Arnaud, Lopatkin, Allison J., Andrews, Ian W., French, Shawn, Matic, Ivan, Brown, Eric D., Collins, James J.

Journal:

Year:

2019

File:

PDF, 1.41 MB

2019

16

A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action

Yang, Jason H., Wright, Sarah N., Hamblin, Meagan, McCloskey, Douglas, Alcantar, Miguel A., Schrübbers, Lars, Lopatkin, Allison J., Satish, Sangeeta, Nili, Amir, Palsson, Bernhard O., Walker, Graham C

Journal:

Year:

2019

Language:

english

File:

PDF, 3.63 MB

english, 2019

17

A White-Box Machine Learning Approach for Revealing Antibiotic Mechanisms of Action

Yang, Jason H., Wright, Sarah N., Hamblin, Meagan, McCloskey, Douglas, Alcantar, Miguel A., Schrübbers, Lars, Lopatkin, Allison J., Satish, Sangeeta, Nili, Amir, Palsson, Bernhard O., Walker, Graham C

Journal:

Year:

2019

File:

PDF, 3.63 MB

2019

18

Bacterial metabolic state more accurately predicts antibiotic lethality than growth rate

Lopatkin, Allison J., Stokes, Jonathan M., Zheng, Erica J., Yang, Jason H., Takahashi, Melissa K., You, Lingchong, Collins, James J.

Journal:

Nature Microbiology

Year:

2019

Language:

english

File:

PDF, 1.68 MB

english, 2019

19

Growth‐Stage‐Dependent Regulation of Conjugation

Sysoeva, Tatyana A., Kim, You Lim, Rodriguez, Jonathan, Lopatkin, Allison J., You, Lingchong

Journal:

Year:

2019

Language:

english

File:

PDF, 2.73 MB

english, 2019

20

Growth‐Stage‐Dependent Regulation of Conjugation

Sysoeva, Tatyana A., Kim, You Lim, Rodriguez, Jonathan, Lopatkin, Allison J., You, Lingchong

Journal:

Year:

2019

File:

PDF, 2.73 MB

2019

21

Environmental and genetic determinants of plasmid mobility in pathogenic Escherichia coli

Bethke, Jonathan H., Davidovich, Adam, Cheng, Li, Lopatkin, Allison J., Song, Wenchen, Thaden, Joshua T., Fowler, Vance G., Xiao, Minfeng, You, Lingchong

Journal:

Science Advances

Year:

2020

File:

PDF, 2.20 MB

2020

22

Predictive biology: modelling, understanding and harnessing microbial complexity

Lopatkin, Allison J., Collins, James J.

Journal:

Nature Reviews Microbiology

Year:

2020

File:

PDF, 2.18 MB

2020

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